ANU Supercomputer Facility - Annual Report 1998

Publications

 

The Following papers by Supercomputer Facility staff members and closely related staff were published or in press in 1998. Papers by non-ANUSF members of the Fujitsu Mathematics Project and the Computational Chemistry projects are not listed here.

 

Papers Published

A. J. Drake, R. A. Allsman, T. S. Axelrod, K. C. Freeman, B. A. Peterson, C. Alcock, , K. H. Cook, S. L. Marshall, D. Minniti, P. Popowski, A. C. Becker, C. W Stubbs, A. Tomaney, D. P. Bennett, L. J. King, D. R. Alves, K. Griest, T. Vandehei, M. J. Lehner, M. R. Pratt, P. J. Quinn, W. Sutherland, D. L. Welch, Results from Difference Image Analysis of Galactic Microlensing by the MACHO Collaboration Bull. AAS, Meeting #193, #108.04 (1998).

L. J King, C. Alcock, R. A. Allsman, D. R. Alves, T. S. Axelrod, A. C. Becker, D. P. Bennett, K. H. Cook, A. J Drake, K. C. Freeman, K. Griest, M. J. Lehner, S. L. Marshall, D. Minniti, B. A Peterson, P. Popowski, M. R. Pratt, P. J. Quinn, A. W. Rodgers, C. W. Stubbs, W. Sutherland, A. Tomaney, T. Vandehei, D. L. Welch, Identification on HST Images of Microlensed Stars from the MACHO Project, Bull. AAS, Meeting #193, #108.03 (1998).

A. C. Becker, C. Alcock, R. A. Allsman, D. R. Alves, T. S. Axelrod, D. P. Bennett, K. H. Cook, A. J. Drake, K. C. Freeman, K. Griest, L. J. King, M. J. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, P. Popowski, M. R. Pratt, , P. J. Quinn A. W. Rodgers, C. W. Stubbs, W. Sutherland, A. Tomaney, T. Vandehei, D. L. Welch, D. Baines, A. Brakel, B. Crook, J. Howard, T. Leach, D. Mcdowell, S. Mckeown, J. Mitchell, J. Moreland, E. Pozza, P. Purcell, S. Ring, A. Salmon, K. Ward, G. Wyper, A. Heller, S. Kaspi, O. Kovo, D. Maoz, , A. Retter, S. H. Rhie, P. Stetson, A. Walker, Candidate Binary Microlensing Events from the MACHO Project Bull. AAS, Meeting #193, #108.02 (1998).

D. R. Alves, C. Alcock, R. A. Allsman, T. S. Axelrod, A. Basu, A. C. Becker, D. P. Bennett, K. H. Cook, A. J. Drake, K. C. Freeman, M. Geha, K. Griest, L. J. King, M. J. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, P. Popowski, M. R. Pratt, P. J. Quinn, A. W. Rodgers, C. W. Stubbs, W. Sutherland, A. Tomaney, T. Vandehei, D. L. Welch, The MACHO Project 9 Million Star Color-Magnitude Diagram of the Large Magellanic Cloud: Probing the LMC Disk, Bull. AAS, Meeting #193, #108.01 (1998).

T. S. Axelrod, R. A. Allsman, P. J. Quinn, C. R. Alcock, D. Alves, A. Becker, D. P. Bennett, K. H. Cook, A. Drake, K. C. Freeman, K. Griest, M. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, M. R. Pratt, A. W. Rodgers, C. W. Stubbs, W. J. Sutherland, A. Tomaney, T. Vandehei, D. Welch, The MACHO data pipeline, Proc. SPIE 3349, 152 (1998).

Alcock, C., Allsman, R. A., Alves, D., Ansari, R., Aubourg, E., Axelrod, T. S., Bareyre, P., Beaulieu, J.-Ph., Becker, A. C., Bennett, D. P., Brehin, S., Cavalier, F., Char, S., Cook, K. H., Ferlet, R., Fernandez, J., Freeman, K. C., Griest, K., Grison, Ph., Gros, M., Gry, C., Guibert, J., Lachieze-Rey, M., Laurent, B., Lehner, M. J., Lesquoy, E., Magneville, C., Marshall, S. L., Maurice, E., Milsztajn, A., Minniti, D., Moniez, M., Moreau, O., Moscoso, L., Palanque-Delabrouille, N., Peterson, B. A., Pratt, M. R., Prevot, L., Queinnec, F., Quinn, P. J., Renault, C., Rich, J., Spiro, M., Stubbs, C. W., Sutherland, W., Tomaney, A., Vandehei, T., Vidal-Madjar, A., Vigroux, L., Zylberajch, S. EROS and MACHO Combined Limits on Planetary-Mass Dark Matter in the Galactic Halo, ApJL, 499, 9 (1998).

C. Alcock, R. A. Allsman, D. R. Alves, T.S. Axelrod, A. Becker, D. P. Bennett, K. H. Cook, K. C. Freeman, K., Griest, W. A. Lawson, M. J. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, K. R. Pollard, M. R. Pratt, P. J. Quinn, A. W. Rodgers, W. Sutherland, A. Tomaney, D. L. Welch, The MACHO Project LMC Variable Star Inventory. VII. The Discovery of RV Tauri Stars and New Type II Cepheids in the Large Magellanic Cloud AJ, 115, 1921 (1998).

T. Vandehei, K. Griest, C. Alcock, D. Alves, K. Cook, D. Minniti, S. Marshall, R. A. Allsman, T. Axelrod, K. Freeman, B. Peterson, A. Rodgers, M. Pratt, A. Becker, C. Stubbs, A. B. Tomaney, M. Lehner, D. Bennett, C. Nelson, P. Quinn, W. Sutherland, D. Welch, The MACHO Project: Status Report on the Magellanic Clouds. Bull. AAS, Meeting #192, #07.03 (1998).

C. Alcock, R. A. Allsman, D. R. Alves, T. S. Axelrod, A. C. Becker, D. P. Bennett, K. H. Cook, K. C. Freeman, K. Griest, A. Gould, J. A. Guern, M. J. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, P. Popowski, M. R. Pratt, , P. J. Quinn, A. W. Rodgers, C. W. Stubbs, Sutherland, W. T. Vandehei, D. L. Welch, The Zero Point of Extinction toward Baade's Window from RR Lyrae Stars ApJ, 494, 396 (1998).

C. Alcock, R. A. Allsman, D. R. Alves, T. S. Axelrod, A. C. Becker, A. Basu, L. Baskett, D. P. Bennett, K. H. Cook, K. C. Freeman, K. Griest, J. A. Guern, M. J. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, M. R. Pratt, P. J. Quinn, A. W. Rodgers, C. W. Stubbs, W. Sutherland, T. Vandehei, D. L. Welch, The RR Lyrae Population of the Galactic Bulge from the MACHO Database: Mean Colors and Magnitudes ApJ, 492, 190 (1998).

M. L. Dow, Sparse Inverse and Characteristic Polynomial of Generalized Arrow Matrix, J. Austral. Math Soc. B 39 (E), 667-677 (1998).

P. Cuthbert, J. L. V. Lewandowski, H. J. Gardner, M. Persson, D. B. Singleton, R. L. Dewar, N. Nakajima, W. A. Cooper, Toroidally Localized and Nonlocalized Ballooning Instabilities in a Stellarator, Physics of Plasmas, 5, 2921 (1998).

R. L. Dewar, P. Cuthbert, J. V. L. Lewandowski, H. J. Gardner, D. B. Singleton, N. Nakajima, M. Persson, W.A. Cooper, Quasi-two-dimensional waves in three-dimensional magnetic confinement systems, Physica Scripta, T75, 134 (1998).

S. A. Dettrick, S. S. Lloyd, H. J. Gardner and R. L. Dewar, Particle Orbits and Drift Surfaces in a Heliac, Nuclear Fusion, 38, 1001 (1998).

S. S. Lloyd, H. J. Gardner, T. Hayashi and S. R. Hudson, Self Healing of Magnetic Islands in a Heliac, J. Plasma Fusion Res. SERIES, 1, 484 (1998).

S. Dettrick, H. J. Gardner, and R. Dewar, Neoclassical Ambipolar Radial Electric Fields in H1-NF, J. Plasma Fusion Res. SERIES, 1, 222 (1998).

T. Huber, and A.E. Torda, Protein fold recognition without Boltzmann statistics or explicit physical basis, Prot. Sci. 7 (1998) 1-8.

T. Huber, and W.F. van Gunsteren, SWARM-MD: searching conformational space by cooperative molecular dynamics, J. Phys. Chem. A, 102 (1998) 5937-5943.

S.R. Gadre, S.S. Pundlik, A.C. Limaye and A.P. Rendell, Electrostatic Investigation of Metal Cation binding to DNA Bases and Base Pairs, Chemical Communications, 573 (1998).

Conference and other Publications

A. Rendell, A. Bliznyuk, T. Huber, A. Limaye, J. Gready, S. Greatbanks and R. Schmidt, Hybrid Quantum Mechanical/Molecular Mechanical Studies (QM/MM) of Enzyme Reaction Mechanisms: Building the Computational Engine, HPC Asia '98, Singapore 22-25 Sept 1998.

H. J. Gardner and R. W Boswell, Effective Virtual Environments - Experiences with a Low Cost Immersive System, in K.Y. Lam, B.C. Choo and K. Kumar.Proceedings of HPC Asia'98 Conference, Singapore 22-25 Sept 1998, Vol 1., pp. 658 - 663, Institute of High Performance Computing.

R. Brent, L. Grosz, D., II Harrar, M. Hegland, M. Kahn, G. Keating, G. Mercer, O. Nielsen, M. Osborne, B. Zhou, M. Nakanishi, Development of a Mathematical Subroutine Library for Fujitsu Vector Parallel Processors, ICS '98. Conference proceedings of the 1998 International Conference on Supercomputing, pp. 13-20, ACM July 1998.

R. Brent, L. Grosz, D. Harrar II, M. Hegland, M. Kahn, G. Keating, G. Mercer, M. Osborne, B. Zhou, Design of the Scientific Subroutine Library for the Fujitsu VPP300, in K.Y. Lam, B. C. Khoo, K. Kumar: Proceedings of the 3rd High Performance Computing Asia, Singapore, pp. 424-438, September 1998.
Papers Submitted or in Press

D. L. Welch, C. Alcock, R. A. Allsman, D. R. Alves, T. S. Axelrod, A. C. Becker, D. P. Bennett, K. H. Cook, K. C. Freeman, K. Griest, D. W. Kurtz, M. J. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, M. R. Pratt, P. J. Quinn, A. W. Rodgers, A. Rorabeck, W. Sutherland, A. Tomaney, T. Vandehei Cepheid The MACHO Collaboration: Variables in the LMC and SMC. To appear in the ASP Conference Series, Proceedings of IAU Symposium 190, "New Views of the Magellanic Clouds".

C. Alcock, R. A. Allsman, D. R. Alves, T. S. Axelrod, A. C. Becker, D. P. Bennett, D. F. Bersier, K. H. Cook, K. C. Freeman, K. Griest, J. A. Guern, M. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, M. R. Pratt, P. J. Quinn, A. W. Rodgers, C. W. Stubbs, W. Sutherland, A. Tomaney, T. Vandehei, D. L. Welch (The MACHO Collaboration) The MACHO Project Large Magellanic Cloud Variable Star Inventory. VIII. The Recent Star Formation History of the LMC from the Cepheid Period Distribution, To appear in Astronomical Journal Feb 1999.

D. R. Alves, A. Basu, K. H. Cook, D. L. Welch, C. Alcock, S. Marshall, T. Axelrod, A. Drake, K. Freeman, B. Peterson, R. Allsman, A. Becker, A. Tomaney, K. Griest, T. Vandehei, M. Lehner, D. Bennett, D. Minniti, M. Pratt, W. Sutherland, P. Quinn (The MACHO Collaboration) The MACHO Project LMC Variable Star Inventory: Classical Cepheids, AGB Variables, and the 9 Million Star Color-Magnitude Diagram, Invited contribution to "New Views of the Magellanic Clouds, IAU Symposium 190" eds. Y-H. Chu, N. B. Suntzeff, J. Hesser, D. Bohlender.

C. Alcock, R. A. Allsman, D. R. Alves, T. S. Axelrod, A. Becker, D. P. Bennett, K. H. Cook, K. C. Freeman, K. Griest, M. J. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, M. R. Pratt, P. J. Quinn, A. W. Rodgers, A. Rorabeck, W. Sutherland, A. Tomaney, T. Vandehei, D. L. Welch (The MACHO Collaboration), The MACHO Project LMC Variable Star Inventory. VI. The Second-overtone Mode of Cepheid Pulsation From First/Second Overtone (FO/SO) Beat Cepheids Accepted for publication in the Astrophysical Journal.

D. Alves, C. Alcock, K. Cook, S. Marshall, D. Minniti (LLNL), R. Allsman, T. Axelrod, K. Freeman, B. Peterson, A. Rodgers (MSSSO), K. Griest, T. Vandehei (UCSD), A. Becker, C. Stubbs, A. Tomaney (UW), D. Bennett (ND), M. Lehner (Shef), P. Quinn (ESO), M. Pratt (MIT), W. Sutherland (Ox), D. Welch (McMaster) The MACHO Project LMC Variable Star Inventory: Classical Cepheids and AGB Variables, Invited paper presented at Joint Discussion No.24, Pulsating Stars - Recent Developments in Theory and Observation, XXIII IAU General Assembly. Eds. M. Takeuti & D. Sasselov, Universal Academy Press.

A. J. Drake, R. A. Allsman, T. S. Axelrod, K. C. Freeman, B. A. Peterson, C. Alcock, K. H. Cook, S. L. Marshall, D. Minniti, P. Popowski, A. C. Becker, C. W. Stubbs, A. Tomaney, D. P. Bennett, L. J. King, D. R. Alves, K. Griest, T. Vandehei, M. J. Lehner, M. R. Pratt, P. J. Quinn, W. Sutherland, D. L. Welch, Difference Image Analysis of Galactic Microlensing, Accepted for publication in the Astrophysical Journal.


C. Alcock, R. A. Allsman, D. Alves, T. S. Axelrod, A. C. Becker, D. P. Bennett, K. H. Cook, A. J. Drake, K. C. Freeman, K. Griest, L. J. King, M. J. Lehner, S. L. Marshall, D. Minniti, B. A. Peterson, M. R. Pratt, P. J. Quinn, S. H. Rhie, A. W. Rodgers, P. B. Stetson, C. W. Stubbs, W. Sutherland, A. Tomaney, T. Vandehei, Discovery and Characterization of a Caustic Crossing Microlensing Event in the SMC, Submitted to The Astrophysical Journal.

A. A. Bliznyuk and A. P. Rendell, Faster Semiempirical Gradients, J. Comp. Chem. (in press).

S. P. Greatbanks, J. E. Gready, A. C. Limaye and A.P. Rendell, Enzyme Polarization of Substrates and Cofactor of Dihydrofolate Reductase by Different Theoretical Methods, Proteins (submitted).

T. Huber, and A. E. Torda, Protein sequence threading, the alignment problem and a two step strategy, J. Comp. Chem. 1998 (submitted).

W. R. P Scott, P. H. Hünenberger, I. G. Tironi, A.E. Mark, S. R. Billeter, J. Fennen, A. E. Torda, T. Huber, P. Krüger, and W. F. van Gunsteren, The GROMOS biomolecular simulation program package, J. Phys. Chem. A, 1998 (submitted).

D. Ayers, T. Huber, and A. E. Torda, Protein fold recognition force fields: unusual construction strategies, Proteins, 1998 (submitted).

M. Hegland, M. Kahn and M. Osborne, A parallel algorithm for the reduction to tridiagonal form for eigendecomposition, accepted for publication, Siam Journal on Scientific Computing.


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